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HTAN LinkML Documentation

Welcome to the HTAN LinkML documentation. This documentation describes the data model for the Human Tumor Atlas Network (HTAN).

Data Model Overview

The HTAN Clinical Data Model is organized hierarchically:

graph TD A[Clinical Data] --> B[Modules] B --> C[Demographics] B --> D[Diagnosis] B --> E[Exposure] B --> F[Family History] B --> G[Followup] B --> H[Molecular Test] B --> I[Therapy] B --> J[Vital Status]

Documentation Structure

This documentation is organized into the following sections:

  1. Modules: Detailed documentation for each module in the data model
  2. Quick Start: Get started with the HTAN LinkML data model
  3. Development: Information for developers working with the data model

Getting Started

To get started with the HTAN LinkML data model:

  1. Explore the Modules documentation
  2. Check out the Development guide for implementation details if you are contributing to the data model

Contributing

We welcome contributions to the HTAN LinkML data model. Please see the Development guide for information on how to contribute.

Modules

The HTAN LinkML model is organized into the following modules:

Resources